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Fouzia MOUSSOUNI-MARZOLF

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Base

Nom

Fouzia MOUSSOUNI-MARZOLF

Grade

MCU

Equipe

METHER

Email

fmoussou@univ-rennes1.fr

Adresse

Campus Universitaire Santé, Bâtiment 7, porte 103.

Téléphone

0223237419

Skills

——-Skills————————————————————————

 

 

Data integration in Life and Health Science :

  • From formal modeling of knowledge to data quality awareness during the process of data integration.
  • Patterns of biological entity interactions over time using text mining techniques.
  • Text Mining for Qualitative Annotations of Life and Health Science Data.
  • Data and Text Mining Applied to the Microbiote Biology
  • Enhance Comprehension of Coronavirus research : In-depth retrospective studies and Prospective Reviews
  • Master’s Supervision of students aiming to work in these thematics

Lecturing (past and present)

  • Databases, concepts and techniques for Master Degree’s in Bioinformatics (+ Med)
  • Mathematics Basics for Medicine Cursus.
  • Algorithmics for Bioinformatics Masters
  • Parallel String Matching Algorithms (Practical Training TP) using MPI and PVM (Paris Nord Sorbone)
  • Programming Courses – C++, Python and JAVA
  • Database Design and techniques, practice (TP) at Manchester University.
Research topics and scientific objectives

————Research topics—————————————————-

 

My interests focused first on data integration in Life and Health Science :

  • from formal modelling of knowledge to data quality awareness during the process of data integration.
  • classifying, querying, and possibly reasoning using formal specifications.

 

Current researches focus on :

  • Identification and integration of biological entity interaction patterns from PubMed texts, and their highlight using graphs and graph algorithms, all applied to Microbiote Biology (but not only).
  • Gut Microbiote (and Host) : Data integration of  Metabolic Networks.

 

Education and main positions held

——Professional Experience———————————————-

 

Université de Rennes1

Associate Professor
Jan 2000 – Present (22 ans 9 mois)
NuMeCan Inserm “Nutrition Métabolisms et Cancer”

 

 

Humboldt-Universität zu Berlin

Visiting Researcher
oct 2011 – nov 2011 (2 months)
Knowledge Management in Bioinformatics
Mining Literature applied to Life and Health Sciences

 

 

Visiting Faculty

sep 2003 – déc 2004 (1 year + 4 months)
Knowledge Management in Bioinformatics
Data Integration and Data Warehousing for the comprehension of Life and Health Sience Data

 

 

University of Manchester

Research Associate
mar 1998 – oct 1999 (1 year + 8 months)
Genome Information Management System – GIMS for YEAST
Postdoctoral Position.

 

Université Sorbonne Paris Nord

ATER / Assistant Professor
sep 1995 – aug 1997 (2 years)

 

—————————-Education———————————–

 

  • Université Sorbonne Paris-Nord
    PhD, Computer Science · (1993 – 1997), “Design and Specification of Parallel String Matching Algorithms“

 

  • Université Montpellier II, Research Master (DEA) in Computer Science · (1991 – 1992) – “Interoperability in multi-database systems: Modeling via petri-nets“

 

  • University of Science and Technology (USTHB Alger), Bachelor (BSc), Computer Science · (1986 – 1990)

 

  • Lycée Frantz Fanon (Alger), Baccalauréat C (Mathématiques)

 

Current projects

——————————————————————————————————–

 

Current researches :

  • Identification and integration of biological entity interaction patterns from PubMed texts, and their highlight using graphs and graph algorithms, all applied to Microbiote Biology (but not only).
  • Gut Microbiote (and Host) : Data integration of  Metabolic Networks.

 

 

———-Supervision——————————————————-

 

Anaïs Bugnard, Corentin Lucas, MathildeThierry, Raphaël Stahl, Corentin Lucas, Eva Lemercier, Maël Lefeuvre, Emilie Vincent,Pierre Beaudier,Boris Michenski, Pierre Le Marre, Bertrand Ameline-de-Cadeville, Mario Albrecht (in Manchester), Emilie Guérin (PhD Inserm U522), Nicolas Cauvet, Gwenaelle Marquet , Blandine Lainé, Anne Arcade, Nicolas Cauvet, Olivier Pareige, Karine Thiéry, Laurent Hennion, Gwenegan Rozé, Nicolas Lebreton, Hoel Saout, Nicolas Schnel

 

Membership

Past member of the working groups : ISIBIO, ACI-IMPbio, national network “GDR Bioinformatique Moléculaire CNRS“, Génopole Grand Ouest, Bioinformatics and Transcriptome platforms and ReGIvivis.

 

In-House Commitees

•Hiring committee of Rennes University

•Postgraduate School VAS ‘Vie Agro Santé’

 

Program Commitees

•PC poster session, ECCB – 2014 in Strasbourg.

•NETTAB-2012 Supplement

•Co-organisation de EIC-2012 “European Iron Club”, in Rennes.

•Co-organisation of MOQA days, joint to JOBIM 2010 – Meta Data and Ontologies for data Quality Annotations.

•DILS 2008, in Paris (Data Integration in the Life Sciences)

•WISE 2007 workshop – Approaches and Architectures for Web Data Integration and Mining in Life Sciences.

•ICIQ 2006 (Int. Conf. On Information Quality), organised yearly by the MIT.

Selected publications

———————————————Selected Publications—————-

 

Tamanai-Shacoori Z, Le Gall-David S, Moussouni F, Sweidan A, Polard E, Bousarghin L, Jolivet-Gougeon A. SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review. J Med Microbiol. 2022 May;71(5). doi: 10.1099/jmm.0.001520. PMID: 35511246.

 

De Cadeville, Bertrand-Ameline, Loréal, Olivier and Moussouni-Marzolf, Fouzia. “RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: the hepcidin use-case” Journal of Integrative Bioinformatics, vol. 12, no. 3, 2015, pp. 26-43.

 

 

Moussouni F, Berti-Equille L, (2013) “Cleaning, Integrating and Warehousing Genomic Data from Biomedical Resources”, in Biological Knowledge Discovery Handbook, Wiley Series on Bioinformatics, IEEE Computer Society.

 

 

Moussouni F, Ameline-de-Cadeville B, Leser U and Loréal O, (2012) “Retrospective Analysis of a Gene by Mining Texts: The Hepcidin gene use-case”, in JOBIM 2012 (Journées Ouvertes Biologie Informatique et Mathématiques)